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Old 10-19-2011, 04:06 PM   #1
lewewoo
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Location: Moon

Join Date: Apr 2011
Posts: 60
Default Tophat help: how to maximize CPU performance

We have got a huge amount of RNAseq data and we would like to optimize/maximize the performance of our computer (wisely use the computer resources to speed up assembly step).
Any suggestions for this?
I know there is -p/num-threads for Tophat, how to use it and what is your suggestion for our CPU and memory?
2 X 2.93 GHz 6-Core Intel Xeon
24GB 1333MHz DDR3
Thanks a lot!
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