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Old 01-18-2012, 07:04 AM   #1
htchu.taiwan
Junior Member
 
Location: Taiwan

Join Date: Dec 2011
Posts: 5
Default EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data

Hi,

I wrote a program for de novo assembly of paired-end RNA-seq data.

It's a 64-bits Windows command with .Net framework http://msdn.microsoft.com/en-us/library/w0x726c2.aspx.

You can try it on a Windows-7 PC with 16G RAM for the assembly of single run Illumina transcriptomic data (20G, 90bp~100bp paired-end reads).

EBARDenovo is designed for finding lower-expressed transcripts even their coverage depths are very low (even less than 2x).

The download link:
https://sourceforge.net/projects/ebardenovo

I wish you can obtained fine results by my EBARDenovo program.

Best regards,

I am Hsueh-Ting Chu from Taiwan. htchu.taiwan@gmail.com
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