Quote:
Originally Posted by dpryan
NM_012345 is on chromosome 13 (check the genome browser). I expect you're either reading something wrong or got the wrong refGene table.
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heh, it was an abstract example
012345 is like abcdef
I test ~3000 genes in such way. 1600 works good, they are "+" strand.
~1400 are "-" and when I use
samtools faidx, I can't get correct mRNA, CDS.