Hi,
I just started my phd and I am working with a huge dataset (~7mil reads).
I set blastall for nt into my biolinux shell and since it's going to take forever I wanted to ask for some help on how keep traks of the analysis.
Using the less comand I can see what's on the output file but is there a way to get some numbers out of it? such as how many reads have been submitted already, and stuff like that.
could someone help?
ps.: this is the command I used:
blastall -d 'nt' -p 'blastn' -i contigs.fa -o contigs.fa.blastn -e 1e-06 -b 10 -v 10 -a 4
Thanks
I just started my phd and I am working with a huge dataset (~7mil reads).
I set blastall for nt into my biolinux shell and since it's going to take forever I wanted to ask for some help on how keep traks of the analysis.
Using the less comand I can see what's on the output file but is there a way to get some numbers out of it? such as how many reads have been submitted already, and stuff like that.
could someone help?
ps.: this is the command I used:
blastall -d 'nt' -p 'blastn' -i contigs.fa -o contigs.fa.blastn -e 1e-06 -b 10 -v 10 -a 4
Thanks
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