View Single Post
Old 01-12-2015, 01:47 PM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
Default

The tables are actually hard-coded, see here (N.B., that's an old version, but that part of the code hasn't changed substantially). You can always download the table from UCSC (or biomart if you prefer the Ensembl annotation, which you should) and then use makeTranscriptDbFromGff().
dpryan is offline   Reply With Quote