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Old 03-08-2016, 04:25 AM   #25
oxydeepu
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Location: bangalore,india

Join Date: Jul 2011
Posts: 41
Default Sequence IDs don't match with bed Error CNVkit.

Hi all,

I trying to run CNVkit with tumor and normal samples on exome sequencing. But I tried all possible things mentioned in the docs. I tried different bed file input as the target region and also the annotations but I always end up getting the error.
ValueError: BED file 'results/S04380110_Covered.target.bed' sequence IDs don't match any in BAM file.

Anybody came across this issue. Please help.

Thank you in advance.

Deepak
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