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Old 03-11-2016, 05:13 PM   #36
etal
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Location: California

Join Date: Oct 2013
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The antitarget BED file has "chr" because "access-5k-mappable.hg19.bed" has chr. You could build an access file for GRCh37 using "cnvkit.py access", but it would probably be quicker for you to just copy the hg19 one and delete the "chr" prefixes from each line.
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