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Old 03-12-2008, 11:18 AM   #18
bioinfosm
Senior Member
 
Location: USA

Join Date: Jan 2008
Posts: 482
Default parsing the output

How are people making use of outputs from various tools?

For instance
soap has this one line format with its way of representing variation
shrimp seems even more complicated with a fasta line format not even mentioning where the substitutions / indels are ... even if you look at the prettyplot

Any views on visualizing the data on global scale .. giving an indication of depth of sequencing at various regions on the reference, % variation... etc?
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