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Old 03-12-2008, 11:24 AM   #19
apfejes
Senior Member
 
Location: Vancouver, Canada

Join Date: Feb 2008
Posts: 236
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To answer the part on visualization, I have several tools that create files that are viewable on the UCSC genome browser. or generate a text file showing the aligned reads against the canonical sequence. I now even have a tool for generating post script files of peaks (for Chip-Seq experiments) along entire chromosomes.

The question is really what you're looking for. It's easy to visualize this data, but very hard to create new views that give new insight.
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