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Old 03-12-2008, 11:24 AM   #19
Senior Member
Location: Vancouver, Canada

Join Date: Feb 2008
Posts: 236

To answer the part on visualization, I have several tools that create files that are viewable on the UCSC genome browser. or generate a text file showing the aligned reads against the canonical sequence. I now even have a tool for generating post script files of peaks (for Chip-Seq experiments) along entire chromosomes.

The question is really what you're looking for. It's easy to visualize this data, but very hard to create new views that give new insight.
The more you know, the more you know you don't know. —Aristotle
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