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Old 02-07-2012, 02:49 PM   #2
Location: British Columbia

Join Date: Jan 2012
Posts: 49

I have a couple questions about Control-FREEC,
  1. How does it use the normal sample if provided?
  2. If one provides a normal sample as well as chromosome fasta files, does it account for gc-content bias using the normal sample as well as the fasta files? Or just one of them.
  3. Does Control-FREEC get its bin size from genomic coordinates, or does it use read density?
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