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Old 10-12-2017, 10:40 PM   #3
jvanleuven
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Location: Montana

Join Date: Nov 2011
Posts: 23
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Thank you for the paper. Below are several more that address the issue.
I'm still not sure if we should pick a method or use some agglomeration of them.

Seyednasrollah F, Laiho A, Elo LL. 2015. Comparison of software packages for detecting differential expression in RNA-seq studies. Brief Bioinform. 16:5970. doi: 10.1093/bib/bbt086.

Zhang ZH et al. 2014. A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data. PLOS ONE. 9:e103207. doi: 10.1371/journal.pone.0103207.

Rapaport F et al. 2013. Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data. Genome Biology. 14:R95. doi: 10.1186/gb-2013-14-9-r95.
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