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Old 06-08-2018, 02:12 AM   #2
sbrohee
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Location: Brussels, Belgium

Join Date: Sep 2011
Posts: 21
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OK... I just ran into a great tool that seems to do exactly what I wanted. It is called VariantBam (https://github.com/walaj/VariantBam, https://www.ncbi.nlm.nih.gov/pubmed/27153727).

./variant highcoveragebam.bam -m maxcoverage -o reducedmaxcoveragebam.bam -b

I hope it will be useful for some of you.
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