SEQanswers - View Single Post - blast against Repbase using Repeatmasker or blast

SES · 08-16-2013, 06:52 AM

I would not worry about the differences for your purposes because it sounds like you are just interested in filtering reads. For that task, I think it's fine to just create a database and filter your reads based on matches. Make sure to turn off complexity filtering though.

08-16-2013, 06:52 AM	#2
SES Senior Member Location: Vancouver, BC Join Date: Mar 2010 Posts: 275	I would not worry about the differences for your purposes because it sounds like you are just interested in filtering reads. For that task, I think it's fine to just create a database and filter your reads based on matches. Make sure to turn off complexity filtering though.