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Old 04-09-2009, 07:13 AM   #3
warrenemmett
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Location: South Africa

Join Date: Nov 2008
Posts: 23
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Quote:
Originally Posted by rs705 View Post
Can you be a little more specific about what you want to do with RNA-Seq? There are a couple of software packages that are available, depending on what your interests are.
At the moment I'm just checking out whats available so I'd be interested in any packages that process RNA data. I'm looking for a package that attributes reads to a gene then calculates statistics like RPKM for the gene and uses read clustering to identify novel exons etc. Like I said, I'm more interested in knowing what is available for RNAseq than the specific function.
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