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Old 01-23-2015, 08:51 AM   #3
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Location: San Diego, CA

Join Date: Sep 2013
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Originally Posted by maubp View Post
You probably want to use blastdbcmd to pull the full sequences from the BLAST database (assuming you are using NCBI BLAST+, this tool had a different name in NCBI legacy BLAST).
Thanks for the suggestion! Based on other threads I've seen, I had been considering using blastdbcmd, however if I understand correctly, this will only output a single file containing whatever sequences correspond to the ID's from the list provided as an argument. Is there a way to make blastdbcmd output multiple files?
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