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Old 03-12-2015, 06:11 PM   #2
Michael Love
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Location: Boston

Join Date: Jul 2013
Posts: 333

PCA plot is also nice for seeing sample distances. From the distplot these conditions look very distinct. Why don't you consider testing at a higher threshold than |LFC| > 0, as this seems to be achieved by many genes? See the lfcThreshold argument of ?results. The reasoning is described in the "Specifying minimum effect size" section of the paper.
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