Hello!
I was looking for some software to visualise the gene arrangement on chromosome in humans.
I have both gene coordinates and the fasta sequences.
IGV looked to serve my purpose but it need the file in BAM/SAM format.
I was trying to change my files into BAM format using bowtie but it gives me error!
Please truncate reads and quality values and and re-run Bowtie
I think it is because i have whole gene sequences.
Can you suggest me some other tool or way to overcome this error!
I googled a lot but in vain!
Thanks in advance!
I was looking for some software to visualise the gene arrangement on chromosome in humans.
I have both gene coordinates and the fasta sequences.
IGV looked to serve my purpose but it need the file in BAM/SAM format.
I was trying to change my files into BAM format using bowtie but it gives me error!
Please truncate reads and quality values and and re-run Bowtie
I think it is because i have whole gene sequences.
Can you suggest me some other tool or way to overcome this error!
I googled a lot but in vain!
Thanks in advance!
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