Hi all,
I need to remove low coverage reads from a CHipseq experiment before I attempt assembly (I don't have a reference genome to map back to, so I am improvising). It looks like there are several options, but am not familiar enough with any of them to use. I have access to iPlant atmosphere for computing power so my memory is going to be a bit limited. I am also somewhat of a novice- I have unpacked and run some programs, but I haven't run any scripts of my own. Any suggestions?
I need to remove low coverage reads from a CHipseq experiment before I attempt assembly (I don't have a reference genome to map back to, so I am improvising). It looks like there are several options, but am not familiar enough with any of them to use. I have access to iPlant atmosphere for computing power so my memory is going to be a bit limited. I am also somewhat of a novice- I have unpacked and run some programs, but I haven't run any scripts of my own. Any suggestions?
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