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Old 09-17-2012, 08:18 PM   #1
Hiroki
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Location: Japan

Join Date: May 2010
Posts: 17
Unhappy Combine pairend reads into one file for SOPRA

Hi there,

Sorry for a pitifully newbie question.

How can I combine two fasta files, read 1 and read2 from a Illumina pairend run into a single file as this:

>seq1read1
cagtgtcgaggaac...
>seq1read2
gatatagagatctac...
>seq2read1
cagtgtcgaggttt...
>seq2read2
gatatagagatcgta...

I want to try SOPRA and it requires the format above as matepair read input.

Thank you very much.

Hiroki
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