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Old 11-06-2012, 08:06 AM   #4
themerlin
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Location: Flagstaff, AZ

Join Date: Feb 2010
Posts: 51
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I assume that when you say "metagenomic data" in this context, you mean you have 16S rRNA data from mixed microbial communities.

If you are interested in species, you might check out speciate-it

http://sourceforge.net/projects/speciateit/

It uses markov models to try and mine down to finer taxonomic levels.
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