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Old 02-21-2013, 11:23 AM   #5
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Location: Québec, Canada

Join Date: Jul 2008
Posts: 260

Originally Posted by severin View Post
Thanks for the quick reply. As I am working with these features more I am curious about the following.

What does ray do with contigs and scaffolds it cannot assign to a taxon?

Are they included in the composition analysis?
The composition analysis is performed on the colored de Bruijn graph, not on contigs.

See our Genome Biology paper
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