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Old 03-15-2013, 08:59 AM   #18
seb567
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Location: Québec, Canada

Join Date: Jul 2008
Posts: 260
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Quote:
Originally Posted by severin View Post
when I follow your suggestion with the developmental version I get the following errors

icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_KmerAcademyBuilder/Kmer.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_Library/LibraryPeakFinder.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_Library/LibraryWorker.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_Library/Library.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_MachineHelper/MachineHelper.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_MessageProcessor/MessageProcessor.o
icpc: command line warning #10159: invalid argument for option '-std'
CXX code/plugin_Mock/Parameters.o
icpc: command line warning #10159: invalid argument for option '-std'
code/plugin_Mock/Parameters.cpp(2129): warning #68: integer conversion resulted in a change of sign
uint64_t value=-1;
^

If I run the make file without the -std=c++98 the ray program crashes during the step that follows Selection of optimal read markers

[node195:41872] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x33bb21ec5d]
[node195:41872] [11] Ray() [0x469429]
[node195:41872] *** End of error message ***
[node193:49049] 8 more processes have sent help message help-odls-default.txt / odls-default:could-not-kill

==> BATCH_OUTPUT.ray4 <==
[-9] ------> AAAAAAAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTAC
[-8] ------> AAAAAAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACG
[-7] ------> AAAAAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGA
[-6] ------> AAAAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGAC
[-5] ------> AAAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACC
[-4] ------> AAAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACCT
[-3] ------> AAATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACCTC
[-2] ------> AATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACCTCA
[-1] ------> ATGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACCTCAA
[0] ------> TGTGCCTTCGTTTCAAGTTCTATTCATTCTACGACCTCAAC


I see someone else had the same error but I didn't see a resolution for it
http://www.mail-archive.com/denovoas.../msg00317.html
Someone else also had the problem on 1 sample out of 15 samples during the coloring of the graph (endless processing with v2.1.0 on some samples):


I will fix this. Maybe for the v2.2.0 release, but it will probably appear in the v2.2.1 release later.

Last edited by seb567; 03-15-2013 at 08:59 AM. Reason: added use case
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