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Old 09-20-2011, 10:30 AM   #1
sydghyyh14
Junior Member
 
Location: Beijng, China

Join Date: Mar 2010
Posts: 7
Default RepeatMasker output

I am interested in screening human genome sequences with RepeatMasker.

But I got some results like this in the .out file:

532 22.4 8.4 5.4 chr22 24022607 24022809 (27281757) + LTR87
LTR/ERVL? 414 622 (2) 11670
241 34.0 11.8 3.2 chr22 25658607 25658886 (25645680) +
LTR88c LTR/Gypsy? 7 310 (552) 14807
284 23.4 9.3 13.0 chr22 25916174 25916335 (25388231) +
LTR88b LTR/Gypsy? 666 821 (16) 15305
496 21.4 1.1 0.0 chr22 26283796 26283884 (25020682) +
UCON21 DNA? 89 178 (152) 15973
302 33.5 3.0 3.0 chr22 26455064 26455260 (24849306) + LTR89
LTR/ERVL? 683 879 (0) 16334
507 23.2 1.6 0.0 chr22 26550000 26550124 (24754442) +
MER124 DNA? 58 184 (213) 16545


I don't know why some class or family names followed by "?" character
(e.g. "LTR/Gypsy?").
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