We are happy to announce the official release of QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.
QDD is designed to treat all bioinformatics steps from raw sequences till obtaining PCR primers: Sorting sequences by tag, removing adapters/vectors,
detection of microsatellites, detection of redundancy/possible mobile element association, selection of sequences with target microsatellites and sufficiently long nanosatellite-free flanking regions, and primer design.
The program can be run both under Linux and Windows in an a easy to use command line option, the windows version is supported by a Graphical User Interface.
executables and a manual are available at:
http://www.univ-provence.fr/gsite/Lo...glecz/QDD.html
more details and the corresponding article in Bioinformatics can be found at:
http://bioinformatics.oxfordjournals...stract/btp670?
Jean-François Martin
Centre de Biologie et Gestion des Populations (CBGP)
Montpellier SupAgro
Campus International de Baillarguet
CS 30 016
34 988 Montferrier sur Lez Cedex
tél: 00 33 (0)4 99 62 33 20
fax : 00 33 (0)4 99 62 33 45
mail: [email protected]
QDD is designed to treat all bioinformatics steps from raw sequences till obtaining PCR primers: Sorting sequences by tag, removing adapters/vectors,
detection of microsatellites, detection of redundancy/possible mobile element association, selection of sequences with target microsatellites and sufficiently long nanosatellite-free flanking regions, and primer design.
The program can be run both under Linux and Windows in an a easy to use command line option, the windows version is supported by a Graphical User Interface.
executables and a manual are available at:
http://www.univ-provence.fr/gsite/Lo...glecz/QDD.html
more details and the corresponding article in Bioinformatics can be found at:
http://bioinformatics.oxfordjournals...stract/btp670?
Jean-François Martin
Centre de Biologie et Gestion des Populations (CBGP)
Montpellier SupAgro
Campus International de Baillarguet
CS 30 016
34 988 Montferrier sur Lez Cedex
tél: 00 33 (0)4 99 62 33 20
fax : 00 33 (0)4 99 62 33 45
mail: [email protected]
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