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Old 11-19-2013, 01:30 PM   #5
Location: US

Join Date: Jan 2013
Posts: 77

Originally Posted by rhall View Post
PacBioToCA can work well for small assemblies, computation quickly becomes an issue with larger assemblies. Smrtanalysis also includes AHA (A Hybrid Assembler) for scaffolding, but that is also limited by assembly size.
Thanks, Rhall! You've been always helpful to me!
This should be a small genome. I'm not familiar with AHA. Is it something one can combine with the pacbioToCA-celera pipeline, or is it a parallel pipeline?
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