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Old 03-01-2016, 04:53 AM   #1
Junior Member
Location: Fargo ND

Join Date: Nov 2015
Posts: 5
Default Help: de novo assembly using SMRT portal and hgap.3

Problem: Extremely new to assembly and attempting to execute de novo assembly using hgap.3 in SMRT portal using 9 SMRTcells. lambda example data provided runs fine so I assume that there isn't a problem with the actual process and instead just with what I am doing.

Error I get is P_PreAssemblerDagcon/hgapCorrection Failed. Not sure why.

Additionally it could be a problem with my server but being that none of the memory fills up during the process I feel like I am missing something.

Any help would be amazing and let me know if i can post anything that would be helpful for a solution.

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