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Old 03-01-2016, 09:11 AM   #4
Senior Member
Location: San Francisco

Join Date: Aug 2012
Posts: 322

hgapCorrection is not running as a multipart task, my guess is that the single job breaks the 4gb file size limit for blasr. You can confirm this from the specific log file for the hgapCorrection task, .<job dir>/log/P_PreAssemblerDagcon/hgapCorrection.log, if you don't have access to the file system the file is available in the techsupport download on the main job page. How is SMRT Analysis installed, are you running on a single machine?
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