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Old 07-12-2011, 05:42 AM   #1
Location: Belgium

Join Date: Nov 2008
Posts: 79
Default Assembly Comparison

Dear all,

Let's say I have performed several assemblies on the same dataset and I would like to compare the results. I know I can look at N50, average contig length, etc. But I was more thinking of comparing the obtained contigs: how much contigs are the same, how much contigs of assembly1 are imbedded in contigs from assembly2, ...

Thanks for the feedback,

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