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Old 11-08-2012, 10:45 PM   #8
EGrassi
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Location: Turin, Italy

Join Date: Oct 2010
Posts: 66
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Quote:
Originally Posted by sdriscoll View Post
snip
I saw BEER too but did not read the results (bad bad Elena!).
Thanks for the interesting post, right now I'm not directly interested in cufflinks alternate transcript capabilities but who know what the future brings (actually I would really like to stick to my original research interests about transcription factors and leave the deep sequencing field until it become more mature...another option would be to develop some new
software [not to add noise to the scene, just for internal use at least for the first year ] but here "pure" computer science projects are not the first option).
If I will perform some tests with these other tools I will definitely report some results.

ps. I read about * in the read name field in the sam format specifications.
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