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Old 03-12-2013, 05:55 AM   #2
SylvainL
Senior Member
 
Location: Geneva

Join Date: Feb 2012
Posts: 179
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Hi,

you can use the function coverageBed included in the bedtools suite and then, (for example using the Rpackage Rsamtools), it is really easy to select the uncovered region of your reference and extract the corresponding sequence...
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