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Old 08-13-2013, 10:29 PM   #1
ericfit
Junior Member
 
Location: iowa

Join Date: Jan 2011
Posts: 4
Default Can I put single and pair-ended RNAseq data together in DESeq analysis

I have RNA-seq data from Illumina GA (single-ended)and Hiseq (pair-ended). Just wonder if I could put them together in differential gene expression analysis. I know pair-end is much better than single-end in accuracy. But not sure if it is reasonable to put them together in the analysis. many thanks
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