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Old 02-20-2014, 08:36 AM   #3
Wallysb01
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Location: San Francisco, CA

Join Date: Feb 2011
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Depending on what type of data each is in terms of SE/PE or 50bp/100bp, etc, it maybe worth it to just completely ignore the old data. Though you don’t mention it, I’d bet you have absurd coverage, and it is possible to “over assemble” a genome with ridiculous coverage.

Like GenoMax said, you might as well do all of them with a bacterial genome, but without more specifics its hard to recommend which route is likely to be better.
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