View Single Post
Old 03-06-2014, 04:56 PM   #4
Dagga
Member
 
Location: Sydney

Join Date: Feb 2014
Posts: 20
Default

Hi All,

The I have assembled both sets of data individually and it seems the data for the second run is not as good as there is some contamination. So I have a further question.

If I was going to use my first assemble as a reference, how do I map the reads of the second run to this?

Also - if I use my first run as a reference, can the contigs be lengthed using the read reads or will my contigs be limited in size to the reference and can no longer be expanded, even with new reads.

Cheers
Dagga is offline   Reply With Quote