Thread: DESeq2 error
View Single Post
Old 09-06-2014, 10:39 AM   #1
stormin
Member
 
Location: US

Join Date: Aug 2014
Posts: 23
Default DESeq2 error

Hi all,

New to DESeq2 and getting error consistently while running this line:

dds <- DESeq(dds)

The error message:

estimating size factors
estimating dispersions
same number of samples and coefficients to fit, estimating dispersion by treating samples as replicates
gene-wise dispersion estimates
mean-dispersion relationship
Error in lfproc(x, y, weights = weights, cens = cens, base = base, geth = geth, :
newsplit: out of vertex space
Calls: DESeq ... estimateDispersionsFit -> localDispersionFit -> locfit -> lfproc -> .C
In addition: There were 18 warnings (use warnings() to see them)
Execution halted


Any ideas? Thanks!

Last edited by stormin; 09-06-2014 at 11:38 AM.
stormin is offline   Reply With Quote