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Old 09-09-2014, 06:34 AM   #6
mbblack
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Location: Research Triangle Park, NC

Join Date: Aug 2009
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Quote:
Originally Posted by stormin View Post
But there must be a lower limit on this question. For example, 15 minutes post treatment is probably not going to be enough time for new mRNA to accumulate. Now, what about a hour? I just want to see if there are any prior study or personal experience on this. I'm sorry if the original question is confusing.
Without knowing anything about the treatment (is this a xenobiotic? - pharmaceutical or industrial chemical?, pesticide?, is it reactive or stable?, is it a small or large molecule?, or is it a dose of radiation or some other "treatment"?), the cell type (I'm assuming you are talking about some sort of in vitro treatment?) the culture conditions and so forth there is no way to even give you reasonable guesses as answers.

Keep in mind that gene expression is the sum of all processes giving rise to a particular concentration of a particular mRNA at any given time. There are small molecules that can have an affect on measured gene expression almost instantly upon exposure. There are xenobiotics which will induce several cascades of expression changes over time from the first few hours to days out from initial exposure. Often your limitation for long term exposures is simple cell viability, but you may detect adaptive changes in gene expression profiles for as long as you can keep the cells alive.

The "best" time for sampling will vary tremendously depending on the specifics of the treatment, and the cell type being exposed. A pilot study is really the only way to pick good exposure(s) and time ponts for your particular treatment and cell type. Relying on results from other studies of different compounds or cell types is really not much better than pure guessing in most instances. Even using IVIVE (In vivo to In vitro extrapolation) to compute cellular exposures from animal studies has not been a guarantee of success in my experience, when working with the identical compound.
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Last edited by mbblack; 09-09-2014 at 06:41 AM.
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