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Old 12-05-2014, 05:24 PM   #5
Location: US

Join Date: Aug 2014
Posts: 23

Originally Posted by GenoMax View Post
Which version of samtools are you using?
Version number is 0.1.19-4428cd

Originally Posted by GenoMax View Post
Is sorting process making temporary files (with names containing 0001.bam etc) before you get that error?
It looks like no temporary files are created. The command throws the error message after less than a minute of running (actually I'm not sure how long it typically takes). It looks like it stops after loading the file, since calling the same command with the unmapped bam file as argument is much faster in reaching the error message.
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