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Old 12-06-2014, 03:07 AM   #11
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,053

No harm in trying the latest samtools but TopHat page has this to say

Removed SAMtools as an external dependency in order to avoid incompatibility issues with recent and future changes of SAMtools and its code library (an older, stable SAMtools version is now packaged with TopHat)
I also see a v.0.1.20 on samtools download page so if you want to stay with the old series give that a try.
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