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Old 02-01-2015, 04:26 PM   #1
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Location: CT

Join Date: Feb 2015
Posts: 3
Default filtering out human contaminants

I am an experimental biologist and is very very naive to bioinformatics. I have been trying to analyse metagenome data from one of our sample. We are interested in understanding the gene pathways represented up or down in relative samples. We are following the workflow which was done in HMP. To filter out human contaminants i used bmtagger but i got the file output of the contaminants.
Does anyone know how to extract the unaligned files after running bmtagger?
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