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Old 01-30-2017, 05:23 AM   #2
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,053

AFAIK bcl2fastq v.2.18 is only available for linux. Rather than cygwin you could use a virtual machine with unix.

If you are able to use BaseSpace then that may be an option (though I don't have first hand experience with it).
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