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Old 11-16-2010, 12:44 PM   #4
SongLi
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Location: Durham

Join Date: Oct 2010
Posts: 19
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Thank you James,

However, it may not be the reason, because in the log file you posted, it says v1.1.3 there.

I still have the problem on my side.



Quote:
Originally Posted by James View Post
I fixed this problem. It may have been two things:

It may have been calling an older prep_reads I had lurking in my path.

It said I was calling tophat v1.1.0 even though I downloaded v1.1.3. I just re-downloaded the binaries and replaced them. Now it tells me I'm running v1.1.3.

I'm running Mac OSX 10.5.8. by the way.
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