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Old 02-28-2011, 09:21 PM   #5
Milkman
Junior Member
 
Location: Australia

Join Date: Feb 2011
Posts: 3
Default Geneious

I use geneious pro for more than low throughput tasks such as alignments, trees etc, although it is good with them too. With Illumina data (78 nt reads) it will quite quicky do denovo assembly of 20 million reads then batch Blast the contigs in groups of 200. With reference assembly it is faster, of course. For someone without Perl/Unix experience, I recommend it. The free version is worth playing with until you can find the $400 for Pro.
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