View Single Post
Old 07-20-2011, 07:44 AM   #2
dariober
Senior Member
 
Location: Cambridge, UK

Join Date: May 2010
Posts: 311
Default

Hi,
I think you can look at the NM tag in the SAM/BAM file. If both reads of a pair have NM:i:0 than the match is perfect.

Dario
dariober is offline   Reply With Quote