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Old 07-27-2011, 05:32 AM   #2
chenyao
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Location: Beijing

Join Date: Jul 2011
Posts: 74
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I think in tophat_out files, "left_kept_reads" is mapped by bowtie, "left_kept_reads_seq1"(forget the name,the second one) is mapped by the rest reads which failed by bowtie.
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