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Old 07-18-2012, 05:17 AM   #3
jlli
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Location: FL

Join Date: Jun 2008
Posts: 19
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You can try

cutadapt : http://code.google.com/p/cutadapt/
or
fastx clipper : http://hannonlab.cshl.edu/fastx_toolkit/index.html

Tha cutadapt has more options.
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