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Old 11-09-2012, 12:49 PM   #2
joshuapk
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Location: Pittsburgh

Join Date: Mar 2012
Posts: 9
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I would suggest either downloading the mitochondria Genbank files and parsing with Bio::Perl Feature-Annotation (http://www.bioperl.org/wiki/HOWTO:Feature-Annotation). Or if these genes have individual identifiers from your BLAST you can use
blastcmddb -db [local nt] -entry_batch [file with ids per line] -out (output name)
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