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Old 12-06-2011, 06:06 AM   #2
Location: New York

Join Date: Mar 2009
Posts: 15

Have you checked the 454AllStructVars.txt? One possibility is that there wasn't enough confidence in that that particular "deleted" region to classify it as "High Confidence".

Such variations would in turn be categorized in the 454AllStructVars.txt, which uses a lower threshold.
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