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Old 03-17-2019, 07:41 PM   #665
ssully
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Location: NYC

Join Date: Aug 2010
Posts: 48
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How do I run the basic BBmap.sh script in Windows? What is the corresponding java command? I want to align four sets of paired-end Illumina RNA-Seq reads to a genome assembly. I am particularly concerned to correctly identify introns, as this genome is thought to have only a few intron-containing genes.

Last edited by ssully; 03-17-2019 at 07:43 PM.
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