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Old 03-27-2017, 09:34 AM   #1
jsaray
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Location: IN my house

Join Date: Mar 2017
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Default Firebrowse Methylation Preprocessing CutOff

Hi All,

At the end of this website :

https://confluence.broadinstitute.or...n+Preprocessor

At the Clustering section is stated that "The default cutoff is .2, but it can be tuned based on the desired output file size".

I would want to tune this cutoff programatically, but I don't find how this can be achieved. I am using Python and I have :

rnaSEQ = firebrowse.Archives().StandardData(cohort='COADREAD',data_type='Methylation_Preprocess')

I reviewed all the parameters of StandardData action, but I don't find this cutoff parameter.

Best regards,
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