Hi All,
I have 3 to 4 working shell scripts
for SRA to FASTQ
FASTQ to BAM
BAM to BEDGRAPH
can I write single shell script interconnecting these shell which are working individually fine . If so it is creating me several problem like I am writing fastq files to a temporary folder which is not able is recognize by second shell . If there any online links to these kind of problems I would appreciate help. What are kinds of issues to consider while merging several shell programs .
Thanks in advance,
Anusha.Ch
I have 3 to 4 working shell scripts
for SRA to FASTQ
FASTQ to BAM
BAM to BEDGRAPH
can I write single shell script interconnecting these shell which are working individually fine . If so it is creating me several problem like I am writing fastq files to a temporary folder which is not able is recognize by second shell . If there any online links to these kind of problems I would appreciate help. What are kinds of issues to consider while merging several shell programs .
Thanks in advance,
Anusha.Ch
Comment