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  • makeblastdb error while using repeat masker locally

    Hii
    I installed a local copy of Repeat masker on my system . However when I tried to mask repeated sequences in my genome , I get an error invoking makeblast db- something like this:

    ./RepeatMasker apis2noempty.fa [11:31AM]
    RepeatMasker version open-3.3.0
    Search Engine: NCBI/RMBLAST
    Master RepeatMasker Database: /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/RepeatMaskerLib.embl ( Complete Database: 20110419 )


    Building general libraries in: /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/20110419/general
    RepeatMasker::createLib(): Error invoking /home/chipseq/Naveen/repmasker/rmblast/bin/makeblastdb on file /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/20110419/general/at.lib.


    Can anyone help me solve this issue
    Thanks

  • #2
    Needed this question myself...answer was mostly found here:

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